UMR 8640 : Physico-Chimie Théorique

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(January 2017)

Biomolecular hydration dynamics: a jump model perspective

The dynamics of water molecules within the hydration shell surrounding a biomolecule can have a crucial influence on its biochemical function. Characterizing their properties and the extent to which they differ from those of bulk water have thus been long-standing questions. Following a tutorial approach, we review the recent advances in this field and the different approaches which have probed the dynamical perturbation experienced by water in the vicinity of proteins or DNA. We discuss the molecular factors causing this perturbation, and describe how they change with temperature. We finally present more biologically relevant cases beyond the dilute aqueous situation. A special focus is on the jump model for water reorientation and hydrogen bond rearrangement.

Extension of Marcus Picture for Electron Transfer Reactions with Large Solvation Changes

We showed, using first-principle molecular dynamics simulations, that the standard Marcus theory of charge transfer reaction in solution, relying on a linear solvent response approximation, and involving two parameters, the reorganization energy and the reaction free-energy parameter, may fail when the solvation has a different character in the reactant and product state. Such situation arise for even simple half oxydo- reduction reactions involving the Cu+/Cu2+ or Ag/Ag+ couples in water. We proposed theoretical extensions that exhibit the correct non-linear response behavior and reproduce the simulation results quantitatively, whereas Marcus theory breaks down.

De Boltzmann aux expériences « in silico »

Apparue au milieu du XXe siècle, la simulation moléculaire est aujourd’hui un outil largement utilisé pour aider à interpréter et comprendre des résultats expérimentaux, tester de nouvelles théories, ou prédire le comportement physique ou chimique de la matière.

Des orbitales localisées aux propriétés des matériaux : Construction de champs de forces classiques pour la matière condensée

Des chercheurs du laboratoire PECSA et du laboratoire PASTEUR ont proposé une approche originale en utilisant une représentation de la structure électronique en termes d’orbitales localisées.